Index

A

artificial_V() (in module covid.fetch)

B

beta_interp() (in module covid.utilities)

C

cases_to_beta() (in module covid.utilities) compartment_map() (covid.fetch.Dataset method) CompartmentalModel (class in covid.models) cost_func() (in module covid.utilities) covid module covid.environment module covid.fetch module

covid.models module covid.postprocessing module covid.utilities module covid_argparse() (in module covid) csv_to_json() (in module covid.utilities)

D

Dataset (class in covid.fetch) date_to_int() (in module covid.utilities) define_parameters() (covid.fetch.Dataset method) (covid.models.CompartmentalModel method) (covid.models.SEAIQHRD method) (covid.models.SEIR method) (covid.models.SIR method) (covid.models.SIRD method) (covid.models.SIRV method) (covid.models.SIRVD method) (covid.models.Spatial_SIR method)

define_transfer_matrix() (covid.models.CompartmentalModel method) (covid.models.SEAIQHRD method) (covid.models.SEIR method) (covid.models.SIR method) (covid.models.SIRD method) (covid.models.SIRV method) (covid.models.SIRVD method) (covid.models.Spatial_SIR method) doubling_time() (in module covid.utilities) doubling_trend_to_Sd() (in module covid.utilities)

E

example() (covid.models.Spatial_SIR method) exp_decay_func() (in module covid.utilities)

exp_func() (in module covid.utilities) exp_lin_func() (in module covid.utilities)

F

fit_parameters() (covid.models.CompartmentalModel method) (covid.models.SEAIQHRD method) (covid.models.SEIR method) (covid.models.SIR method) (covid.models.SIRD method) (covid.models.SIRV method) (covid.models.SIRVD method) (covid.models.Spatial_SIR method)

flatten() (in module covid.utilities)

G

get_beta_ramp() (in module covid.utilities) get_colormap() (in module covid.postprocessing) get_data() (covid.fetch.Dataset method) get_date_labels() (in module covid.postprocessing) get_logger() (in module covid.utilities) get_map() (in module covid.postprocessing) get_parameters_from_data() (covid.models.CompartmentalModel method) (covid.models.SEAIQHRD method) (covid.models.SEIR method) (covid.models.SIR method) (covid.models.SIRD method) (covid.models.SIRV method) (covid.models.SIRVD method) (covid.models.Spatial_SIR method)

get_pop() (covid.fetch.Dataset method) get_raw_data() (covid.fetch.Dataset method) get_seasonal_beta_variation() (in module covid.utilities) grad_descent() (in module covid.utilities)

I

init_estimation_params() (in module covid.fetch) initial_values (class in covid.utilities) initialize() (covid.models.CompartmentalModel method) (covid.models.SEAIQHRD method) (covid.models.SEIR method) (covid.models.SIR method) (covid.models.SIRD method) (covid.models.SIRV method) (covid.models.SIRVD method) (covid.models.Spatial_SIR method)

int_to_date() (in module covid.utilities) interp_mat() (in module covid.utilities)

J

json_handler() (in module covid.utilities)

L

laplacian() (in module covid.utilities) last_compartment_value() (covid.models.CompartmentalModel method) (covid.models.SEAIQHRD method) (covid.models.SEIR method) (covid.models.SIR method) (covid.models.SIRD method) (covid.models.SIRV method) (covid.models.SIRVD method) (covid.models.Spatial_SIR method)

latlon_to_place() (in module covid.fetch) latlonrangetozoom() (in module covid.postprocessing) latlontopixels() (in module covid.postprocessing) load_data() (in module covid.postprocessing) logistic_func() (in module covid.utilities)

M

model_eqns() (covid.models.CompartmentalModel method) (covid.models.SEAIQHRD method) (covid.models.SEIR method) (covid.models.SIR method) (covid.models.SIRD method) (covid.models.SIRV method) (covid.models.SIRVD method) (covid.models.Spatial_SIR method) model_fit_function() (covid.models.CompartmentalModel method) (covid.models.SEAIQHRD method) (covid.models.SEIR method) (covid.models.SIR method) (covid.models.SIRD method) (covid.models.SIRV method) (covid.models.SIRVD method) (covid.models.Spatial_SIR method)

module covid covid.environment covid.fetch covid.models covid.postprocessing covid.utilities

P

pixelstolatlon() (in module covid.postprocessing) plot_compartment() (in module covid.postprocessing) plot_compartment_comparison() (in module covid.postprocessing)

plot_compartments() (in module covid.postprocessing) plot_compartments_comparison() (in module covid.postprocessing) plot_doubling_trend() (in module covid.postprocessing)

R

ramp_function() (in module covid.models) rk_step() (covid.models.CompartmentalModel method) (covid.models.SEAIQHRD method) (covid.models.SEIR method) (covid.models.SIR method) (covid.models.SIRD method) (covid.models.SIRV method) (covid.models.SIRVD method) (covid.models.Spatial_SIR method)

run_model() (covid.models.CompartmentalModel method) (covid.models.SEAIQHRD method) (covid.models.SEIR method) (covid.models.SIR method) (covid.models.SIRD method) (covid.models.SIRV method) (covid.models.SIRVD method) (covid.models.Spatial_SIR method)

S

SEAIQHRD (class in covid.models) SEIR (class in covid.models) set_initial_values() (covid.models.CompartmentalModel method) (covid.models.SEAIQHRD method) (covid.models.SEIR method) (covid.models.SIR method) (covid.models.SIRD method) (covid.models.SIRV method) (covid.models.SIRVD method) (covid.models.Spatial_SIR method)

SIR (class in covid.models) SIRD (class in covid.models) SIRV (class in covid.models) SIRVD (class in covid.models) Spatial_SIR (class in covid.models)

T

transfer_value() (covid.models.CompartmentalModel method) (covid.models.SEAIQHRD method) (covid.models.SEIR method) (covid.models.SIR method) (covid.models.SIRD method) (covid.models.SIRV method) (covid.models.SIRVD method) (covid.models.Spatial_SIR method)

U

update_parameters() (covid.models.CompartmentalModel method) (covid.models.SEAIQHRD method) (covid.models.SEIR method) (covid.models.SIR method) (covid.models.SIRD method) (covid.models.SIRV method) (covid.models.SIRVD method) (covid.models.Spatial_SIR method) update_transfer_matrix() (covid.models.CompartmentalModel method) (covid.models.SEAIQHRD method) (covid.models.SEIR method) (covid.models.SIR method) (covid.models.SIRD method) (covid.models.SIRV method) (covid.models.SIRVD method) (covid.models.Spatial_SIR method)

update_transfer_value() (covid.models.CompartmentalModel method) (covid.models.SEAIQHRD method) (covid.models.SEIR method) (covid.models.SIR method) (covid.models.SIRD method) (covid.models.SIRV method) (covid.models.SIRVD method) (covid.models.Spatial_SIR method)

V

vec_diff() (in module covid.utilities)